subject: Home computers aid disease fight
posted: Sun, 19 Sep 2004 11:38:48 +0100

[ala SETI@home ... grid apps - Ed]

Home computers aid disease fight

The scientists use spare capacity in home computers
More than 150,000 home computer users are helping scientists to find
new ways to treat diseases like Alzheimer's.

They are signed up to Folding@Home, a global network of computer

Scientists use spare capacity in these computers to test algorithms
designed to show how potential drugs will bind to proteins in the

Many diseases are caused by protein malfunctions. Scientists say the
project is starting to reveal what type of drugs could fight these

Folding@Home was set up four years ago by scientists at Stanford
University in the US.

Users download a programme, which enables scientists to use spare
capacity in their computer to test their algorithm.

New drugs

Speaking at the American Chemical Society's national meeting in
Philadelphia, Dr Vijay Pande of Stanford University said the project
could help to find new drugs for a wide range of diseases.

The programme is designed to show how certain molecules, the key
ingredients of any drug, will affect specific proteins.

In the past, computer-based algorithms have not proved accurate
enough. But Dr Pande says his programme gets around that problem.

"For almost 20 years, people have been talking about doing drug
design computationally but the real challenge has been getting
sufficient accuracy," he said.

"Our main goal was to come up with methods to really push that
accuracy to the point at which our methods are pharmaceutically

Dr Pande says computers can be used to simulate work that would take
many years to complete in the laboratory.

"We can do the hard work. We can study the things that would be hard
to investigate just synthetically and then make suggestions for which
ones should be followed up.

"I think it may open the door to a new range of therapeutics that we
just can't access very readily right now."

Dr Pande said the results are promising. "I think we're at the point
where pharmaceutical companies start to get interested."

Cancer drugs

Researchers at Oxford University set up a similar project to try to
find new treatments for cancer.

The Screensaver Lifesaver project now harnesses the power of 2.8m
computers around the world.

Professor Graham Richards, who set up the project, said such schemes
are playing a major role in drug research.

"We now have 2.8m PCs signed up so we actually have more computer
power for this type of work than all of the pharmaceutical industry
put together," he told BBC News Online.

"We can do things that the major pharmaceutical companies cannot do."

The Screensaver Lifesaver project recently completed research into
potential treatments for anthrax and smallpox. The results have been
passed to the US government.

It also identified 14 potential targets for fighting cancer. The
computers are now being used to try to hone in on these targets and
identify those most suited to being turned into drug treatments.

"We are trying to narrow those results down. It costs money to make
and test these drugs," said Professor Richards.

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